Projeler ve Yayınlar

Yayınlar

  • Bayram, N. E., Gercek, Y. C., Çelik, S., Mayda, N., Kostic, A. Z., Dramicanin, A. M., Özkök, A. (2021) "Phenolic and free amino acid profiles of bee bread and bee pollen with same botanical origin-similarities and differences." Arabian Journal of Chemistry, 103004.
  • Bayram, N. E., Gerçek, Y. C., & Öz, G. C. (2020). Screening for antioxidant capacity, pollen types and phytochemical profile by GC/MS and UHPLC from propolis, Progress in nutrition, 22(3).
  • Bayram, S., Dengiz, C., Gerçek, Y. C., Cetin, I., & Topcul, M. R. (2020). Bioproduction, structure elucidation and in vitro antiproliferative effect of eumelanin pigment from Streptomyces parvus BSB49. Archives of Microbiology, 202(9), 2401-2409.
  • Ecem Bayram, N., Canlı, D., Gercek, Y. C., Bayram, S., Çelik, S., Güzel, F., Morgil, H., Cevahir Oz,G. (2020). Macronutrient and micronutrient levels and phenolic compound characteristics of monofloral honey samples, Journal of Food Nutrition and Research, 22 (3).
  • Mayda, N., Özkök, A., Bayram, N. E., Gerçek, Y. C., & Sorkun, K. (2020). Bee bread and bee pollen of different plant sources: determination of phenolic content, antioxidant activity, fatty acid and element profiles. Journal of Food Measurement and Characterization, 1-15.
  • Morgil, H., Gercek, Y. C., & Tulum, I. (2020). Single Nucleotide Polymorphisms (SNPs) in Plant Genetics and Breeding. In The Recent Topics in Genetic Polymorphisms. IntechOpen.
  • Bayram, S., Bayram, N. E., Gercek, Y. C., Aydogan, M. N., & Oz, G. C. (2017). Chemical analysis and antimicrobial effect of propolis from Hakkari province of turkey against some pathogenic microorganisms. European Journal of Biology, 76(2), 74-78.
  • Bayram, S., Bayram, N. E., Gercek, Y. C., & Sorkun, K. (2016). Anticytotoxic and antimutagenic effects of propolis on human lymphocytes in vitro. Mellifera, 16(2), 38-46.
  • Ecem Bayram, N., & Gercek, Y. C. (2019). Appropriate maceration duration for the extraction of propolis. Fresenius Environmental Bulletin, 28(1), 188-192.
  • Bayram, N. E., Gerçek, Y. C., Bayram, S., & Toğar, B. (2019). Effects of processing methods and extraction solvents on the chemical content and bioactive properties of propolis. Journal of Food Measurement and Characterization, 1-12.
  • Bayram, N. E., Gercek, Y. C. (2018). Major constituents of different propolis samples. Hacettepe Journal of Biology and Chemistry, 45(4), 581-584.
  • Gercek, Y. C., Akman, G., Morgil, H., Calıkan, M., & Oz, G. C. (2017). Organosulfur compounds of Allium Tuncelianum (Kollmann) Ozhatay, B. Mathew & Şiraneci extracts by SPME/GC-MS and determining their cytotoxic effect on HeLa cells. International Journal of Advances in Science Engineering and Technology, 5(2), 53-58.
  • Morgil, H., Gercek, Y. C., Caliskan, M., & Oz, G. C. (2017). Investigation of the Mechanism of Physiological Tolerance in Lentil (Lens culinaris Medik.) Cultivars under Drought Stress Conditions. European Journal of Biology, 76(1), 31-35.
  • Aras, A., Iqbal, M. J., Naqvi, S. K., Gercek, Y. C., Boztas, K., Gasparri, M. L., ... & Farooqi, A. A. (2014). Anticancer activity of essential oils: targeting of protein networks in cancer cells. Asian Pac J Cancer Prev, 15, 8047-8050.

Projeler

  • Türkiye'de Yayılış Gösteren C. mahaleb Taksonlarının Fizikokimyasal, Fitokimyasal ve Antioksidan Özelliklerinin Belirlenmesi, BAP
  • Yüzey yanıt metodolojisi kullanılarak Prunus avium L. polifenollerinin püskürtmeli kurutma yöntemi ile enkapsülasyonu, BAP
  • Yanıt yüzey metodolojisi kullanılarak Prunus avium L. meyveleri antioksidan bileşiklerinin ultrasonik destekli ekstraksiyonunun optimizasyonu, BAP
  • Doğal atık kaynaklar kullanılarak antiviral ve antimikrobiyal özellikte maske membranı üretimi / KOSGEB Ar-Ge ve İnovasyon Programı​
  • Giresun ve Çevresinde Yayılış Gösteren Kiraz Gen Kaynaklarının Fitokimyasal Analizleri Antioksidan Aktivitelerinin Tayin Edilmesi ve in Vitro Biyoyararlılığının İncelenmesi, BAP
  • Türkiye'de Yayılış Gösteren Cerasus L. (Rosaceae) Cinsi Taksonları Üzerinde Moleküler Sistematik ve Fitokimyasal Çalışmalar - TUBİTAK
  • Türkiyenin farklı bölgelerinde üretilen bazı monofloral balların mineral içerik uçucu bileşen ve antimikrobiyal aktivitelerinin incelenmesi – BAP
  • Farklı çözücülerde ekstrakt edilen propolis örneğinin kimyasal içeriklerinin ve biyoaktif özelliklerinin karşılaştırılması - BAP
  • Çalı ve ağaçsı Cerasus sensu Browicz taksonlarının RADSeq yöntemiyle genom düzeyinde SNP profiline dayalı olarak genotiplendirilmesi ve filogenetik analizleri - BAP
  • Etil Metansulfonat (EMS) Mutantı Chlorella vulgaris'in Biyoreaktörde Yetiştirilmesi, Gelişimi ve Yağ Asidi İçeriğinin Araştırılması - BAP
  • Kuraklık Stresi Altında Yetiştirilen Mercimek (Lens culinaris Medik.) BitkisindeTranskriptom (RNA-sek) Analizi - BAP
  • Thuja orientalis L. Bitkisinin Uçucu Yağ İçeriklerinin GC-MS ile Belirlenmesi - BAP
  • Tunceli Sarımsağının (Allium tuncelianum L.) Organosülfür Bileşiklerinin GC-MS ve UHPLC Analizleri - BAP
  • Süperkritik CO2 Ekstraksiyon Sistemi İle Yalancı İğde Meyve ve Tohum Yağı Eldesi ve Endüstriye Yönelik Üretim Koşullarının Optimizasyonu – TAGEM

Yayınlar

1.Emisoglu-Kulahli, H., Gul, S., Morgil, H., Ozcan, O., Aygenli, F., Selvi, S., ... & Ozturk, N. (2020). Transcriptome analysis of the circadian clock gene BMAL1 deletion with opposite carcinogenic effects. Functional & Integrative Genomics, 1-16.

2.Morgil, H., Gercek, Y. C., & Tulum, I. (2020). Single Nucleotide Polymorphisms (SNPs) in Plant Genetics and Breeding. In The Recent Topics in Genetic Polymorphisms. IntechOpen.

3.Morgil, H., Tardu, M., Cevahir, G., & Kavakli, İ. H. (2019). Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short-and long-term water deficits. Functional & integrative genomics, 19(5), 715-727.

4.Morgil, H., Gercek, Y. C., Caliskan, M., & Oz, G. C. (2017). Investigation of the Mechanism of Physiological Tolerance in Lentil (Lens culinaris Medik.) Cultivars under Drought Stress Conditions. European Journal of Biology, 76(1), 31-35.

5.Morgil, H., Şık, L., & Erol, O. (2016). Genetic diversity by AFLP analysis within Tulipa orphanidea L.(Liliaceae) populations in Manisa. Celal Bayar Üniversitesi Fen Bilimleri Dergisi, 13(4), 913-917.

6.Seferoglu, A. B., Baris, I., Morgil, H., Tulum, I., Ozdas, S., Cevahir, G., & Kavakli, I. H. (2013). Transcriptional regulation of the ADP-glucose pyrophosphorylase isoforms in the leaf and the stem under long and short photoperiod in lentil. Plant Science, 205, 29-37.

Projeler

1.Cyanidioschyzon merolae alginde bitki benzeri kriptokrom gen yolaklarının Crispr Cas9 yöntemi ile susturularak global gen ifadelerinin belirlenmesi, Hande Morgil, 2020, BAP.

2.Development of Genome-Based Strategies for Detection, Identification and Controlling Plant Pathogenic Phytoplasmas, 2019, TÜBİTAK.

Yayınlar

1. Tulum I, Kimura K and Miyata M. (2020). Identification and sequence analyses of the gliding machinery proteins from Mycoplasma mobile. Scientific Reports.10, 3792 (2020). doi: 10.1038/s41598-020-60535-z.

2. Morgil H, Gercek YC, and Tulum I. (2020). Single Nucleotide Polymorphisms (SNPs) in Plant Genetics and Breeding. In The Recent Topics in Genetic Polymorphisms. IntechOpen.

3. Miyata M, Robinson CR, Uyeda QPT, Fukumori Y, Fukushima S, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro, Tulum I, Wada H, and Wakabayashi K (in alphabetical order). (2020). Tree of motility – A proposed history of motility systems in the tree of life (Review). Genes to Cells. 25:6–21. doi: 10.1111/gtc.12737.

4. Tulum I, Tahara YO and Miyata M. (2019). Peptidoglycan layer and disruption processes in Bacillus subtilis cells visualized using quick-freeze, deep-etch electron microscopy. Microscopy (Oxf). 3;68(6):441- 449. doi: 10.1093/jmicro/dfz033.

5. Mizutani M, Tulum I, Kinosita Y, Nishizaka T, and Miyata M. (2018). Detailed analyses of stall force generation in Mycoplasma mobile gliding. Biophysical Journal. 114(6):1411-1419.

doi: 10.1016/j.bpj.2018.01.029.

6. Terahara N, Tulum I, and Miyata M. (2017). Transformation of crustacean pathogenic bacterium Spiroplasma eriocheiris and expression of yellow fluorescent protein. Biochemical and Biophysical Research Communications. 487(3):488-493. doi: 10.1016/j.bbrc.2017.03.144.

7. Kawakita Y, Kinoshita M, Furukawa Y, Tulum I, Tahara OY, Katayama E, Namba K, and Miyata M. (2016). Structural study of MPN387, an essential protein for gliding motility of a human pathogenic bacterium, Mycoplasma pneumoniae. Journal of Bacteriology. 198(17):2352-9. doi: 10.1128/JB.00160-16.

8. Tulum I, Yabe M, Uenoyama A, and Miyata M. (2014). Localization of P42 and F1-ATPase α-subunit homolog of the gliding machinery in Mycoplasma mobile revealed by newly developed gene manipulation and fluorescent protein tagging. Journal of Bacteriology. 196(10), 1815- 1824.

doi: 10.1128/JB.01418-13.

9. Seferoglu AB, Baris I, Morgil H, Tulum I, Ozdas S, Cevahir G, and Kavakli IH. (2013). Transcriptional regulation of the ADP-glucose Pyrophosphorylase isoforms in the leaf and the stem under long and short photoperiod in lentil. Plant Science. 205-206, 29-37. doi: 10.1016/j.plantsci.2013.01.006

Projeler

1. TÜBİTAK 2232- Uluslararası Lider Araştırmacılar Programı (TUBITAK 2232- International Fellowship for Outstanding Researchers)

Proje no:  118C290 (Devam ediyor)

Proje adı: Development of Genome-Based Strategies for Detection, Identification and Controlling Plant Pathogenic Phytoplasmas (01.10.2019 – 01.10.2022)

Projedeki görevi: Yürütücü

2. Japan Science and Technology Agency (JST)- Impulsing Paradigm Change through Disruptive Technologies Program (ImPACT)

Proje adı: Artificial Cell Reactor Technology for an Enriched and Secure Society and New Bioengineering  (01.04.2018 – 31.03.2019)

Projedeki görevi: Araştırmacı (Tamamlandı)

3. Grants-in-Aid for Scientific Research (KAKENHI)- Japan Society for Promotion of Science (JSPS)- JAPAN

Proje no:  17H01544 (Tamamlandı)

Proje adı: Three types of motility mechanisms in pathogenic bacteria, class Mollicutes (01.04.2017 – 31.03.2020)

Projedeki görevi: Araştırmacı

4. Kurabo Industries Co. Ltd. Institute of Technology Business Development Group- Osaka/JAPAN

Proje adı:  ブラックシリコン抗菌素材表面の菌体観察- Science-Industry Collaborative Research Projects Program- Observation of bacterial cells on the surface of black silicon as antibacterial material (01.04.2017 – 31.03.2018)

Projedeki görevi: Araştırmacı (Tamamlandı)

5. Grants-in-Aid for Scientific Research (KAKENHI)- Japan Society for Promotion of Science (JSPS)- JAPAN

Proje no:  50209912/ Area 3407 (Tamamlandı)

Proje adı: Harmonized supramolecular machinery for motility and its diversity (28.06.2012 – 31.03.2017)

Projedeki görevi: Araştırmacı

6. DAIKIN Industries Co. Ltd. Technology and Innovation Center- Osaka/JAPAN

Proje adı:  Science-Industry Collaborative Research Projects Program- Designing an anti-bacterial and anti-virus plasma ioniser titanium apatite filter for air conditioners (01.04.2012 – 31.03.2013)

Projedeki görevi: Araştırmacı (Tamamlandı)

7. Grants-in-Aid for Scientific Research (KAKENHI)- Japan Society for Promotion of Science (JSPS)- JAPAN

Proje no:  24117002 (Tamamlandı)

Proje adı: Mechanism of Mycoplasma gliding (28.06.2012 – 31.03.2016)

Projedeki görevi: Araştırmacı

8. Grants-in-Aid for Scientific Research (KAKENHI)- Japan Society for Promotion of Science (JSPS)- JAPAN

Proje no:  24390107 (Tamamlandı)

Proje adı: Structure and movement of gliding machinery for Mycoplasma gliding (01.04.2012 – 31.03.2016)

Projedeki görevi: Araştırmacı

9. 1002- Hızlı Destek TUBITAK (ARDEB)

Proje no:  108T967 (Tamamlandı)

Proje adı: Memeli Kriptokrom'un Biyolojik Saatteki Yapı İşlev İlişkisi (01.02.2009 – 01.02.2010)

Projedeki görevi: Bursiyer (Tamamlandı)